Paper
Activity-driven microconnectome estimation of macaque visuomotor cortices
Aitor Morales-Gregorio, Robin Gutzen, Pauline Dąbrowska, Alper Yegenoglu, Sandra Diaz-Pier, Sarah Palmis, Sophie Paneri, Alexendre René, Panos Sapountzis, Markus Diesmann, Sonja Grün, Johanna Senk, Georgia Gregoriou, Bjørg Kilavik, Sacha van Albada
(2024) in preparation
Modeled vs. real data: realistic spike train generation for benchmarking and education
Alessandra Stella, Peter Bouss, Simon Essink, Robin Gutzen, Alexander Kleinjohann, Sonja Gruen
(2024) in preparation
Relating the orientation of cortical traveling waves and co-occurring spike patterns
Sven Krauße, Robin Gutzen, Alessandra Stella, Alexa Riehle, Thomas Brochier, Sonja Grün, Michael Denker
(2024) in preparation
Singular Angles: Assessing the similarity of real matrices with identical shape
Jasper Albers, Anno C. Kurth, Robin Gutzen, Aitor Morales-Gregorio, Michael Denker, Sonja Grün, Sacha J. van Albada, Markus Diesmann
(2024) in preparation
Preprint
Comparing apples to apples - Using a modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets
Robin Gutzen, Giulia De Bonis, Elena Pastorelli, Cristiano Capone, Chiara De Luca, Anna Letizia Allegra Mascaro, Francesco Resta, Arnau Manasanch, Francesco Saverio Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Grün, Pier Stanislao Paolucci, Michael Denker
(2024) Cell Reports Methods, 4(1), 100681. doi: 10.1016/j.crmeth.2023.100681
Paper | Repository
Simulations Approaching Data: Cortical Slow Waves in Inferred Models of the Whole Hemisphere of Mouse
Cristiano Capone, Chiara De Luca, Giulia De Bonis, Robin Gutzen, Irene Bernava, Elena Pastorelli, Francesco Simula, Cosimo Lupo, Leonardo Tonielli, Anna Letizia Allegra Mascaro, Francesco Resta, Francesco Pavone, Micheal Denker, Pier Stanislao Paolucci
(2023) Communications Biology 6, 266, doi: 10.1038/s42003-023-04580-0
Paper
Analysis and quantitative comparison of neural network dynamics on a neuron-wise and population level
Robin Gutzen
(2023) Doctoral Thesis at RWTH Aachen University
Dissertation
Evaluating the statistical similarity of neural network activity and connectivity via eigenvector angles
Robin Gutzen, Sonja Grün, Michael Denker
(2022) Biosystems, 223, 104813. doi.org:10.1016/j.biosystems.2022.104813
Paper | Repository | Thread
Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data
Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün and Michael Denker
(2018) Frontiers in Neuroinformatics 12:90, doi:10.3389/fninf.2018.00090
Paper | Repository | Summary
Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data
Guido Trensch, Robin Gutzen, Inga Blundell, Michael Denker and Abigail Morrison
(2018) Frontiers in Neuroinfromatics 12:81, doi:10.3389/fninf.2018.00081
Paper | Repository | Summary
Talks
From simplified neuron models to complex behavior
(2023) Collective Neurogenesis Art Workshop, Bonn
Slides
Exploring the diversity of cortical wave activity with a unifying workflow approach
(2023) Human Brain Project Concluding Event, Jülich
Slides
Adaptable workflows for neural activity analysis in an open-source environment
(2023) International Forum on Neural Engineering & Brain Technologies, Berlin
Slides
Collaborative Brain Wave Analysis Pipeline
(2023) HBP Fundraising Bootcamp, Brussels
Slides | Event
Blocks instead of puzzles pieces - analyzing cortical wave activity across scales in an adaptable framework
(2022) EBRAINS BASSES workshop, Rome
Slides | Stream
Rigorous comparison and validation of network activity data
(2022) Helmholtz PoF Topic 3 Talk Series, online
Slides
An adaptable analysis pipeline makes cortical wave phenomena comparable across heterogeneous datasets
(2022) Brain Matters webinar, online
Slides | Stream
Eigenangles: evaluating the statistical similarity of neural network simulations via eigenvector angles
(2021) Neural Coding, online
Slides | Proceedings
Developing pipelines for multi- scale/species/method analysis
(2020) Human Brain Project Summit, Athens
Slides (short version) | Slides (long version)
Building a workflow for the analysis of slow wave activity across heterogeneous measurements
(2019) Human Brain Project SP3 annual meeting, Liège
Slides
Evaluating neural network models within a formal validation framework
(2019) INCF Neuroinformatics Conference, Warsaw
Slides | Stream
Comparing activity dynamics of models and living brains
(2019) Human Brain Project SP4 annual meeting, Paris
Slides 
How much do you trust a model? - Rigor in neuroscientific modeling and simulation through validation
(2019) Brain Twitter Conference
Thread | Abstract
Poster
Quantifying structural similarity between real matrices with arbitrary shape
Jasper Albers, Anno C. Kurth, Robin Gutzen, Aitor Morales-Gregorio, Michael Denker, Sonja Grün, Sacha J. van Albada, Markus Diesmann
(2024) CNS, Rio Grande do Norte
Hierarchical organization of multivariate spiking statistics across cortical areas
Aitor Morales-Gregorio, Robin Gutzen, Sarah Palmis, Sofia Paneri, Panagiotis Sapountzis, Alexander Kleinjohann, Sonja Grün, Thomas Brochier, Georgia G. Gregoriou, Bjørg E. Kilavik, Sacha J. van Albada
(2024) FENS, Vienna
Quantifying shared structure between real matrices of arbitrary shape
Jasper Albers, Anno C. Kurth, Robin Gutzen, Aitor Morales-Gregorio, Michael Denker, Sonja Grün, Sacha J. van Albada, Markus Diesmann
(2024) FENS, Vienna
Cobrawap as a tool for inspecting and explaining learning performance of bio-inspired artificial neural networks
Giulia De Bonis, Cosimo Lupo, Federico Marmoreo, Alessandra Cardinale, Gianluca Gaglioti, Thierry Nieus, Andrea Pigorini, Robin Gutzen, Marcello Massimini, Michael Denker, Pier Stanislao Paolucci
(2024) 5th International Convention on the Mathematics Of Neuroscience and AI, Rome
Towards an EBRAINS service for brain wave analysis: Cobrawap
Cosimo Lupo, Irene Bernava, Robin Gutzen, Elena Pastorelli, Cristiano Capone, Chiara De Luca, Anna Letizia Allegra Mascaro, Francesco Resta, Arnau Manasanch, Sofia Karvounari, Eleni Mathioulaki, Francesco S. Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Gruen, Andrew Davison, Pier Stanislao Paolucci, Michael Denker, Giulia De Bonis
(2023) 7th BigBrain Workshop: Challanges of big data integration, Gróska
Relating the orientation of cortical traveling waves and co-occurring spike patterns
Sven Krauße, Robin Gutzen, Alessandra Stella, Thomas Brochier, Alexa Riehle, Sonja Grün, Michael Denker
(2023) Bernstein Conference, Berlin
Abstract
Cortical wave dynamics across visual areas of the macaque monkey during an instructed, free-viewing, visuomotor task
Robin Gutzen, Thomas Brochier, Alexa Riehle, Sonja Grün, Michael Denker
(2023) Bernstein Conference, Berlin
Abstract
Elephant and NetworkUnit: Frameworks for analysis and validation of neural network models in NEST and neuromophic systems
Moritz Kern, Robin Gutzen, Sonja Grün and Michael Denker
(2023) Neuromorphic Computing Day, Jülich
#SBATCH –gres=gpu:1 -C “a100|rtx8000”
PDF
Task-related visual stimuli provoke distinvt LFP wave dynamics in the macaque visual cortex
Robin Gutzen, Thomas Brochier, Alexa Riehle, Sonja Grün, Michael Denker
(2023) System Vision Science Summer School, Tübingen
Towards classification of spatio-temporal wave patterns based on principal component analysis
Junji Ito, Robin Gutzen, Sven Krauße, Michael Denker, Sonja Grün
(2023) CNS, Leibzig
Towards an EBRAINS service for brain wave analysis: Cobrawap
Irene Bernava, Cosimo Lupo, Robin Guzen, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Gruen, Andrew Davison, Pier Stanislao Paolucci, Michael Denker, Giulia De Bonis, Elena Pastorelli, Cristiano Capone, Chiara De Luca, Anna Letizia Allegra Mascaro, Francesco Resta, Arnau Manasanch, Sofia Karvounari, Eleni Mathioulaki, Francesco Saverio Pavone
(2023) CNS, Leibzig
Structuring cortical wave analysis with Cobrawap: a modular and adaptable pipeline for heterogeneous datasets
Robin Gutzen, Giulia De Bonis, Chiara De Luca, Elena Pastorelli, Cristiano Capone, Cosimo Lupo, Irene Bernava, Anna Letizia Allegra Mascaro, Francesco Resta, Arnau Manasanch, Francesco Saverio Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Grün, Andrew Davison, Pier Stanislao Paolucci, Michael Denker
(2023) HBP Summit, Marseille
PDF
Relating the orientation of cortical traveling waves and co-occurring spike patterns
Sven Krauße, Robin Gutzen, Alessandra Stella, Thomas Brochier, Alexa Riehle, Sonja Grün, Michael Denker
(2023) Meeting of the German Neuroscience Society, Göttingen
Estimation of microscale connectivity from spiking activity of macaque visuomotor cortices
Aitor Morales-Gregorio, Robin Gutzen, Pauline Dąbrowska, Alper Yegenoglu, Sandra Diaz-Pier, Sarah Palmis, Sophie Paneri, Alexendre René, Panogiotis Sapountzis, Markus Diesmann, Sonja Grün, Johanna Senk, Georgia Gregoriou, Bjørg Kilavik, Sacha van Albada
(2023) HBP Student Conference, Madrid
PDF
Using eigenvector angles to statistically evaluate the influences of connectivity structure on correlation structure
Robin Gutzen, Sonja Grün, Michael Denker
(2022) Bernstein Conference, Berlin
PDF
Cobrawap: a modular cortical wave analysis pipeline for heterogeneous data
Robin Gutzen, Giulia De Bonis, Elena Pastorelli, Cristiano Capone, Chiara De Luca, Glynis Mattheisen, Anna Letizia Allegra Mascaro, Francesco Resta, Francesco Saverio Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Grün, Andrew Davison, Pier Stanislao Paolucci, Michael Denker
(2022) OHBM Conference, Glasgow
PDF
An adaptable analysis pipeline makes cortical wave phenomena comparable across heterogeneous datasets
Robin Gutzen, Giulia De Bonis, Elena Pastorelli, Cristiano Capone, Chiara De Luca, Glynis Mattheisen, Anna Letizia Allegra Mascaro, Francesco Resta, Francesco Saverio Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Grün, Andrew Davison, Pier Stanislao Paolucci, Michael Denker
(2021) Sfn Neuroscience, online
PDF | Video
Relating slow waves from different measurement techniques through an adaptable pipeline
Robin Gutzen, Giulia De Bonis, Elena Pastorelli, Cristiano Capone, Chiara De Luca, Glynis Mattheisen, Anna Letizia Allegra Mascaro, Francesco Resta, Francesco Saverio Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Grün, Andrew Davison, Pier Stanislao Paolucci, Michael Denker
(2021) Human Brain Project Student Conference, online
PDF
Building adaptable and reusable pipelines for investigating the features of slow cortical rhythms across scales, methods, and species
Robin Gutzen, Giulia De Bonis, Elena Pastorelli, Cristiano Capone, Chiara De Luca, Glynis Mattheisen, Anna Letizia Allegra Mascaro, Francesco Resta, Francesco Saverio Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Sonja Grün, Andrew Davison, Pier Stanislao Paolucci, Michael Denker
(2020) Bernstein Conference, online
PDF | Abstract
Estimation of the cortical microconnectome from in vivo spiking activity in the macaque monkey
Aitor Morales-Gregorio, Pauline Dąbrowska, Robin Gutzen, Alper Yegenoglu, Sandra Diaz-Pier, Sarah Palmis, Sophie Paneri, Alexendre René, Panos Sapountzis, Markus Diesmann, Sonja Grün, Johanna Senk, Georgia Gregoriou, Bjørg Kilavik, Sacha van Albada
(2020) CNS, online
PDF
Designing reproducible analysis workflows for experimental and simulated activity using Elephant
Danylo Ulianych, Robin Gutzen, Julia Sprenger, Elena Pastorelli, Giulia De Bonis, Pier Stanislao Paolucci, Andrew Davison, Sonja Grün, Michael Denker
(2020) Human Brain Project Summit, Athens
PDF
Multi-scale, multi-species, multi-methodology experiments, analysis tools and simulation models of Brain States and Complexity in SP3-UseCase002
Giulia De Bonis, Elena Pastorelli, Cristiano Capone, Robin Gutzen, Alessandra Camassa, Arnau Manasanch Berengué, Francesco Resta, Anna Letizia Allegra Mascar, Antonio Pazienti, Andrea Pigorini, Thierry Nieus, Alessandro Arena, Johan Frederik Storm, Marcello Massimini, Francesco Saverio Pavone, Maria V. Sanchez-Vives, Maurizio Mattia, Andrew Davison, Michael Denker, Pier Stanislao Paolucci
(2020) Human Brain Project Summit, Athens
PDF
A statistical test of eigenvector angles to evaluate the similarity of neural network simulations
Robin Gutzen, Sonja Grün, Michael Denker
(2019) INM-ICS Retreat, Jülich
PDF
Reproducible neural network simulations: model validation on the level of network activity data
Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün and Michael Denker
(2019) Meeting of the German Neuroscience Society, Göttingen
PDF
Reproducible neural network simulations: model validation on the level of network activity data
Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün and Michael Denker
(2018) Bernstein Conference, Berlin
PDF | Abstract
Utilizing the Elephant and NetworkUnit frameworks within the Collaboratory for an HPC enabled workflow
Alper Yegenoglu, Robin Gutzen, Michael Denker, Sonja Grün
(2018) Human Brain Project Summit, Glasgow
PDF
Validation of Simulated on Experimental Spiking Activity: The Human Brain Project Perspective
Michael von Papen, Paulina Dąbrowska, Nicole Voges, Robin Gutzen, Michael Denker, Johanna Senk, Espen Hagen, David Dahmen, Lukas Deutz, Moritz Helias, Markus Diesmann, Sonja Grün
(2018) INM-ICS Retreat, Jülich
PDF
Towards automation of experiment-driven building and validation of a mesocircuit model
Michael von Papen, Nicole Voges, Paulina Dąbrowska, Robin Gutzen, Michael Denker, David Dahmen, Moritz Helias, Johanna Senk, Espen Hagen, Lungsi Sharma, Shailesh Appukutan, Andrew Davison, Sonja Grün
(2018) Human Brain Project Summit, Maastricht
PDF
Validation Methods for Neural Network Simulations
Robin Gutzen, Sonja Grün, Michael Denker
(2017) Data Science Summer School, Paris
PDF | Abstract
Software
Cobrawap
Robin Gutzen, Giulia De Bonis, Chiara De Luca, Michael Denker
RRID:SCR_022966, doi:10.5281/zenodo.10198748
GitHub | PyPi | Zenodo
NetworkUnit
Robin Gutzen, Michael von Papen, Michael Denker
RRID:SCR_016543
GitHub | PyPi
Elephant Tutorial: LFP analysis
Robin Gutzen, Alexander Kleinjohann
Video | Notebook (limited access)
Cobrawap Showcase Application
Robin Gutzen
doi:10.5281/zenodo.10210141
Repository | Zenodo
… Other Contributions on Github